Breakfast
Pumpkin Cream Cheese Muffins

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Moist, perfectly spiced pumpkin muffins are filled with sweetened cream cheese and topped with brown sugar streusel. Enjoy these Pumpkin Cream Cheese Muffins for a fall breakfast or sweet afternoon snack.

Pumpkin cream cheese muffins on a plate. The muffin wrapper is discarded.

Even though it’s almost Halloween and Thanksgiving and Christmas are upon us, I’m not ready to let go of fall just yet.

It’s been an unseasonably warm fall here, so while I’m glad it probably won’t snow for trick-or-treating tomorrow, I’m hoping we get a few cooler fall days before we start the holiday season and winter.

So, even though I’m already planning Christmas cookie recipes for you all, I’m going to stick with the pumpkin recipes for a little while longer.

That means making at least 1 or 2 more batches of these Pumpkin Cream Cheese Muffins before we get down to all things cranberry and peppermint.

After all, there’s nothing better than pumpkin paired with cream cheese! Give me a pumpkin cream cheese cake, Danish with pumpkin creamor one of these muffins and I’m a happy woman.

Soft pumpkin muffins with cream cheese filling

Aside from pumpkin bread, pumpkin roll, and pumpkin cheesecake, these little pumpkin cream cheese muffins are one of my all-time favorite fall recipes to make and share. I mean, who can resist pumpkin, cream cheese, and streusel topping? Not this girl.

I took a classic moist pumpkin muffin base and added a lightly sweetened cream cheese filling and a brown sugar pecan streusel on top. After baking, you can choose to add an optional vanilla glaze to make them even tastier, but they’re just as delicious without it.

The recipe makes about 20 muffins, so they’re perfect for making and sharing with neighbors, coworkers, teachers, and of course, family!

Place them in a baking box with some string and a cute label and you’ll have a beautiful and delicious gift for any autumn occasion.

Toasted in the oven a day or two later, they might almost be better than freshly baked. Almost.

Do you know what I’m thinking? I’m thinking Thanksgiving morning breakfast, maybe along with my favorite make-ahead breakfast casserole! And you?

How to make Pumpkin Cream Cheese Muffins

I know recipes like this can seem overwhelming at first. But each part of the recipe is actually pretty simple and doesn’t take as long to prepare as you might think!

Recipe components

For these pumpkin cream cheese muffins you will prepare:

  • A cream cheese filling
  • Streusel topping
  • Pumpkin muffin dough
  • Vanilla frosting optional

Overall, for the filling, streusel and muffin dough you will need:

  • 8 ounces softened cream cheese
  • 3 large eggs
  • 3 teaspoons pure vanilla extract
  • 1/2 cup plus 3 tablespoons light or dark brown sugar
  • 3 cups all-purpose flour
  • 2 cups granulated sugar
  • 3 teaspoons homemade pumpkin pie spice
  • 2 teaspoons of baking powder
  • 1/2 teaspoon plus a pinch of salt
  • 1 can (15 ounces) pumpkin puree
  • 1/3 cup vegetable oil
  • ¼ cup melted unsalted butter
  • ¼ cup chopped pecans, optional

I like to use homemade pumpkin pie spice in these muffins, but you can substitute cinnamon if that’s all you have on hand.

When purchasing the ingredients for this recipe, be sure to purchase pumpkin puree and not pumpkin pie filling. The pie filling has extra ingredients that we don’t want in this recipe.

Helpful tips

  • Brown sugar adds a rich flavor to the filling and streusel. If you’re out of brown sugar, try making a simple brown sugar substitute to use in its place. If your brown sugar has hardened in the pantry, check out my post on how to soften brown sugar.
  • Before you start baking, make sure you know how to measure flour correctly. If you do this seemingly simple step correctly, your muffins will always be perfect.
  • The cream cheese for the filling needs to be softened before you can mix it with the egg, vanilla and sugar. If you forget to make it ahead of time, check out my tips for quickly softening cream cheese.

I make these Pumpkin Cream Cheese Muffins

This recipe makes about 20 pumpkin cream cheese muffins, so prepare 20 standard muffin wells by spraying them with nonstick spray or lining them with muffin liners.

Start by preparing the filling and streusel. For the filling, use an electric mixer to beat the cream cheese until smooth, then add the egg, vanilla and brown sugar and beat until smooth.

Don’t worry if there are a couple of bits of cream cheese – it’ll be fine once the muffins are baked. Set the filling aside.

For the topping, mix the brown sugar, flour, pumpkin pie spice, and salt in a bowl. Using a fork, incorporate the melted butter until the mixture becomes crumbly.

If you want to include pecans, add them to the streusel now. Place it in the refrigerator until you are ready to use it.

To make the muffin batter, whisk together the dry ingredients in a large bowl. Add the wet ingredients and mix until well combined.

Now it’s time to assemble the muffins. Add about 1 1/2 tablespoons of muffin substance to each of the prepared muffin wells. I like to use my medium cookie scoop to make it super easy.

Add about 2 teaspoons of the cream cheese filling to the center of the batter in each well. A small cookie scoop comes in handy for this part.

Top each muffin with another 1 1/2 tablespoons of batter, then sprinkle the streusel topping evenly over all muffins.

Bake in the oven at 180°C for 20-25 minutes. The pumpkin cream cheese muffins are done when a toothpick inserted into the center comes out clean.

Allow the muffins to cool before serving. If you want to add vanilla icing, whisk everything together and pour it over the cooled muffins.

Storage Tips

Since these muffins are filled with cream cheese, you can store them at room temperature for up to a day, but I recommend refrigerating them for long-term storage. Stored in an airtight container in the refrigerator, they last up to 4 days.

If you prefer you can also freeze them! Place the muffins in a zip-top freezer bag or airtight container and freeze for up to a month.

Frequently asked questions

Can I use homemade pumpkin puree instead of canned pumpkin puree?

YES! If you are using Homemade pumpkin pureefor this recipe you will need about 2 cups.
Keep in mind that canned pumpkin puree is typically a darker orange color than homemade pumpkin puree, since it is a blend of pumpkins. So your muffins may not be as vibrant as mine, but they will still taste amazing!

I don’t like using vegetable oil. What can I use instead?

If you don’t keep vegetable or canola oil on hand, feel free to use your favorite neutral-flavored oil, such as avocado oil.

  • Preheat oven to 375°F. Spray 20 muffin wells with nonstick cooking spray or line with paper liners.

  • Prepare filling: In a medium bowl, with an electric mixer, beat cream cheese until smooth; about 3 minutes. Add the egg, vanilla and brown sugar. Beat until smooth – there may be some bits of cream cheese, that’s fine. Set aside.

  • Make the Streusel topping: In a medium bowl, mix the brown sugar, flour, pumpkin pie spice, and salt. Add the butter and mix with a fork until crumbly. If desired, add optional pecans. Store in the refrigerator until ready to use.

  • Make the muffin batter: In a large bowl, whisk together the flour, sugar, baking powder, pumpkin pie spice, and salt. Add the eggs, pumpkin, oil and vanilla. Beat with an electric mixer until smooth and smooth, without overbeating.

  • Distribute 1 ½ tablespoons (one medium cookie scoop) of the muffin batter evenly between them 20 prepared muffin wells. Add about 2 teaspoons (small cookie scoop) of the cream cheese mixture to the center of each muffin batter. Cover with another 1 1/2 tablespoons of muffin batter. Sprinkle streusel topping.

  • Bake in preheated oven for 20-25 minutes. Remove muffin pans to cooling racks and allow muffins to cool completely before serving.

  • Optional Frosting: Once muffins are cool, mix together confectioners’ sugar, vanilla, and milk 1 teaspoon at a time until desired consistency is reached. The icing should be thin enough to drizzle onto the muffins.

Store muffins in the refrigerator in an airtight container for up to 4 days.

Serve: 1muffin, Calories: 318kcal, Carbohydrates: 50G, Protein: 4G, Fat: 12G, Saturated fat: 5G, Polyunsaturated fats: 3G, Monounsaturated fats: 3G, Trans fats: 0.1G, Cholesterol: 42mg, Sodium: 150mg, Potassium: 109mg, Fiber: 1G, Sugar: 34G, Vitamin A: 3569UI, Vitamin C: 1mg, Soccer: 58mg, Iron: 1mg

Nutrition information is calculated automatically, so should only be used as an approximation.

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